I haven't started learning Colemak yet but I believe that it could be even more effective against RSI if you moved the space bar to the home row. Probably where 'd' currently is on Colemak ('g' on QWERTY). The space bar is probably the most frequently used button on the keyboard but the thumb isn't in a good position to press it. That's what I gather from the fact that the base of my thumb has recovered the slowest and hurts the most from the typing pain I got over the past month. Heck, if you think about it, when your hands are in touch typing position the thumb doesn't even push down at a correct angle - you push your thumb down side ways to hit the space bar.
I tried changing the layout myself with Windows Keyboard Layout editor but that software will mess up Colemak's capslock/backspace key. Plus I would like to map a letter or even the left shift key to the space bar and you can't do that on WKLE either. Anyway I read on another thread that Shai is too busy to do custom layout mods for people but Shai if you ever update Colemak in the future I think it's something to consider.